Tutorials
Singularity Containers
ARCH This tutorials will allow you to run Singularity containers on computers where you do not have root (administrative) privileges, like the Rockfish cluster at ARCH. A
Running BEAST on Rockfish
ARCH Short Tutorial: Running BEAST on Rockfish BEAST (Bayesian Evolutionary Analysis Sampling Trees) is a powerful tool for phylogenetic analysis using Bayesian inference. Widely used
Rockfish Cluster Queue Configuration:
As of January 9th, 2024, partitions and cues will be reconfigured to allow more effective utilization of resources. We have made a video that describes the new configuration for the Rockfish cluster.
Short Tutorial: How to Create a Slurm Script
Learn the basics of SLURM scripts, as well as how to submit SLURM scripts for running job arrays and Message Passing Interface (MPI) programs
Loading Rockfish R Submodules into an R session or R-Studio environment
Tutorial to guide you through the process of loading R submodules in an R session or R-Studio environment
Python Virtual Environments
Tutorial on how to use a python venv and conda environment in a slurm script.